PITDB

Summary

TGEs : 4,575
Transcripts : 4,994
Peptides : 16,119

Description

Sample name: 4_C5LH8ACXX_TGACCA_L005

Replicate 1. RNA-Seq data was collected at 8h post nelsonbay virus infection. MS-data was SILAC-medium labelled.

Translated Genomic Elements (TGEs)

Navigation Panel

Sample: SAMP000013

TGE Accession	TGE Type(s)	Uniprot ID(s)	Protein	Protein Description	Organism(s)
TGE0000137	5prime_shortened, known	L5KA64 , P61204 , Q3U344	Q3U344_MOUSE	ADP-ribosylation factor 3	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000172	known	A2RTT4 , L5JTB9 , P61088	A2RTT4_MOUSE	MCG4297	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000212	known	Q3V235 , Q99623	Q3V235_MOUSE	Prohibitin 2	Homo sapiens , Mus musculus
TGE0000273	known, known variation	L5K2Z3 , P61224 , Q52L50	Q52L50_MOUSE	RAS related protein 1b	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000298	known	L5KX12 , P63167 , P63168	DYL1_MOUSE	Dynein light chain 1; cytoplasmic	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000391	5prime_shortened, known	L5KM99 , P62158 , P62204	CALM_MOUSE	Calmodulin	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000454	5prime_alternative, known	L5KED0 , P84090 , Q4FZH7	Q4FZH7_MOUSE	Enhancer of rudimentary homolog	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000571	known	P63279 , P63280	UBC9_MOUSE	SUMO-conjugating enzyme UBC9	Homo sapiens , Mus musculus
TGE0000593	known	L5KGY6 , P60510 , Q3UNF2	Q3UNF2_MOUSE	Serine/threonine-protein phosphatase	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000724	5prime_shortened_3prime_alternative, known	L5KS29 , P63241 , P63242	IF5A1_MOUSE	Eukaryotic translation initiation factor 5A-1	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000769	known	L5JPX3 , P61289 , Q4FK54	Q4FK54_MOUSE	Proteaseome (Prosome; macropain) 28 subunit; 3	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000770	known	L5JQ27 , P61353 , Q5BLJ9	Q5BLJ9_MOUSE	60S ribosomal protein L27	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000943	known	P62258 , Q5SS40	Q5SS40_MOUSE	14-3-3 protein epsilon	Homo sapiens , Mus musculus
TGE0000966	5prime_alternative, known	L5K4K7 , P62314 , P62315	SMD1_MOUSE	Small nuclear ribonucleoprotein Sm D1	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001049	known	A4FUS1 , L5L3I2 , P62249	A4FUS1_MOUSE	40S ribosomal protein S16	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001056	5prime_alternative, known	L5KM75 , P62316 , Q14AF6	Q14AF6_MOUSE	MCG4862	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001085	known	L5L6P2 , P62841 , P62843	RS15_MOUSE	40S ribosomal protein S15	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001094	known	L5L8S1 , Q6ZWZ4 , Q9Y3U8	Q6ZWZ4_MOUSE	60S ribosomal protein L36	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001105	known	L5L4A9 , Q9BZL1 , Q9EPV8	UBL5_MOUSE	Ubiquitin-like protein 5	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001203	known	L5KCS9 , P26368-2 , Q80XR5	Q80XR5_MOUSE	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2; isoform CRA_a	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001211	5prime_shortened, known	A0A024R4M0 , L5L027 , Q6ZWN5	RS9_MOUSE	40S ribosomal protein S9	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001220	known	L5KRW1 , P62081 , Q4FZE6	Q4FZE6_MOUSE	40S ribosomal protein S7	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001225	3prime_alternative, known	L5K1A2 , P61026 , Q4FJL0	Q4FJL0_MOUSE	RAB10; member RAS oncogene family	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001290	5prime_shortened, known	L5JYV7 , O00487 , O35593	PSDE_MOUSE	26S proteasome non-ATPase regulatory subunit 14	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001320	5prime_shortened, known	L5K245 , Q7L1Q6-4 , Q9CQC6	BZW1_MOUSE	Basic leucine zipper and W2 domain-containing protein 1	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001363	known	L5KTA1 , P59708 , Q9Y3B4	SF3B6_MOUSE	Splicing factor 3B subunit 6	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001390	known	Q921Y0 , Q9H8S9	MOB1A_MOUSE	MOB kinase activator 1A	Homo sapiens , Mus musculus
TGE0001487	known	P62873 , Q3TQ70	Q3TQ70_MOUSE	Beta1 subnuit of GTP-binding protein	Homo sapiens , Mus musculus
TGE0001624	3prime_alternative, known	L5KB37 , P83870 , Q7RTV0	PHF5A_MOUSE	PHD finger-like domain-containing protein 5A	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001655	known, novel	- , P62318 , P62320	SMD3_MOUSE	Small nuclear ribonucleoprotein Sm D3	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001659	5prime_shortened, known	L5JL92 , O70274 , Q12974	TP4A2_MOUSE	Protein tyrosine phosphatase type IVA 2	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001690	5prime_shortened, known	L5K984 , P62910 , P62911	RL32_MOUSE	60S ribosomal protein L32	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001738	known	B2RXQ8 , L5K8K1 , Q6UXN9	B2RXQ8_MOUSE	MCG19514; isoform CRA_a	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001750	known, novel	- , P83731 , Q8BP67	RL24_MOUSE	60S ribosomal protein L24	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001766	5prime_shortened, known	L5KWL8 , P62633-2 , Q3U935	Q3U935_MOUSE	Putative uncharacterized protein	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001808	known	L5L2T1 , P61313 , Q5M8Q0	Q5M8Q0_MOUSE	Ribosomal protein L15	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001879	known	P61619 , P61620	S61A1_MOUSE	Protein transport protein Sec61 subunit alpha isoform 1	Homo sapiens , Mus musculus
TGE0001880	known	L5KWL6 , P51149 , Q4FJQ0	Q4FJQ0_MOUSE	MCG130610	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001954	known	L5K2D7 , P28066 , Q3UPK6	Q3UPK6_MOUSE	Proteasome subunit alpha type	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001989	5prime_shortened_3prime_alternative, known	L5KQ35 , P0C0S5 , P0C0S6	H2AZ_MOUSE	Histone H2A.Z	Homo sapiens , Mus musculus , Pteropus alecto