PITDB

Summary

TGEs : 4,180
Transcripts : 4,487
Peptides : 15,429

Description

Sample name: 2_C5LH8ACXX_CGATGT_L005

Replicate 2. RNA-Seq data was collected at 0h post nelsonbay virus infection. MS-data was SILAC-light labelled.

Translated Genomic Elements (TGEs)

Navigation Panel

Sample: SAMP000011

TGE Accession	TGE Type(s)	Uniprot ID(s)	Protein	Protein Description	Organism(s)
TGE0000137	5prime_shortened, known	L5KA64 , P61204 , Q3U344	Q3U344_MOUSE	ADP-ribosylation factor 3	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000172	known	A2RTT4 , L5JTB9 , P61088	A2RTT4_MOUSE	MCG4297	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000212	known	Q3V235 , Q99623	Q3V235_MOUSE	Prohibitin 2	Homo sapiens , Mus musculus
TGE0000257	5prime_alternative_3prime_alternative, known	L5L6S2 , P09651-2 , P49312	ROA1_MOUSE	Heterogeneous nuclear ribonucleoprotein A1	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000391	5prime_shortened, known	L5KM99 , P62158 , P62204	CALM_MOUSE	Calmodulin	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000454	5prime_alternative, known	L5KED0 , P84090 , Q4FZH7	Q4FZH7_MOUSE	Enhancer of rudimentary homolog	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000552	known	Q569V4 , Q9UBU8-2	Q569V4_MOUSE	MCG125079	Homo sapiens , Mus musculus
TGE0000571	known	P63279 , P63280	UBC9_MOUSE	SUMO-conjugating enzyme UBC9	Homo sapiens , Mus musculus
TGE0000593	known	L5KGY6 , P60510 , Q3UNF2	Q3UNF2_MOUSE	Serine/threonine-protein phosphatase	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000724	5prime_shortened_3prime_alternative, known	L5KS29 , P63241 , P63242	IF5A1_MOUSE	Eukaryotic translation initiation factor 5A-1	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000770	known	L5JQ27 , P61353 , Q5BLJ9	Q5BLJ9_MOUSE	60S ribosomal protein L27	Homo sapiens , Mus musculus , Pteropus alecto
TGE0000943	known	P62258 , Q5SS40	Q5SS40_MOUSE	14-3-3 protein epsilon	Homo sapiens , Mus musculus
TGE0000966	5prime_alternative, known	L5K4K7 , P62314 , P62315	SMD1_MOUSE	Small nuclear ribonucleoprotein Sm D1	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001056	5prime_alternative, known	L5KM75 , P62316 , Q14AF6	Q14AF6_MOUSE	MCG4862	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001094	known	L5L8S1 , Q6ZWZ4 , Q9Y3U8	Q6ZWZ4_MOUSE	60S ribosomal protein L36	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001203	known	L5KCS9 , P26368-2 , Q80XR5	Q80XR5_MOUSE	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2; isoform CRA_a	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001211	5prime_shortened, known	A0A024R4M0 , L5L027 , Q6ZWN5	RS9_MOUSE	40S ribosomal protein S9	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001220	known	L5KRW1 , P62081 , Q4FZE6	Q4FZE6_MOUSE	40S ribosomal protein S7	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001230	known	L5KTG1 , P62140 , P62141	PP1B_MOUSE	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001290	5prime_shortened, known	L5JYV7 , O00487 , O35593	PSDE_MOUSE	26S proteasome non-ATPase regulatory subunit 14	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001320	5prime_shortened, known	L5K245 , Q7L1Q6-4 , Q9CQC6	BZW1_MOUSE	Basic leucine zipper and W2 domain-containing protein 1	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001363	known	L5KTA1 , P59708 , Q9Y3B4	SF3B6_MOUSE	Splicing factor 3B subunit 6	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001390	known	Q921Y0 , Q9H8S9	MOB1A_MOUSE	MOB kinase activator 1A	Homo sapiens , Mus musculus
TGE0001487	known	P62873 , Q3TQ70	Q3TQ70_MOUSE	Beta1 subnuit of GTP-binding protein	Homo sapiens , Mus musculus
TGE0001624	3prime_alternative, known	L5KB37 , P83870 , Q7RTV0	PHF5A_MOUSE	PHD finger-like domain-containing protein 5A	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001655	known, novel	- , P62318 , P62320	SMD3_MOUSE	Small nuclear ribonucleoprotein Sm D3	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001659	5prime_shortened, known	L5JL92 , O70274 , Q12974	TP4A2_MOUSE	Protein tyrosine phosphatase type IVA 2	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001690	5prime_shortened, known	L5K984 , P62910 , P62911	RL32_MOUSE	60S ribosomal protein L32	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001738	known	B2RXQ8 , L5K8K1 , Q6UXN9	B2RXQ8_MOUSE	MCG19514; isoform CRA_a	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001750	known, novel	- , P83731 , Q8BP67	RL24_MOUSE	60S ribosomal protein L24	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001808	known	L5L2T1 , P61313 , Q5M8Q0	Q5M8Q0_MOUSE	Ribosomal protein L15	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001879	known	P61619 , P61620	S61A1_MOUSE	Protein transport protein Sec61 subunit alpha isoform 1	Homo sapiens , Mus musculus
TGE0001880	known	L5KWL6 , P51149 , Q4FJQ0	Q4FJQ0_MOUSE	MCG130610	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001912	known variation	E7EQG2 , Q8BTU6	Q8BTU6_MOUSE	Eukaryotic initiation factor 4A-II	Homo sapiens , Mus musculus
TGE0001954	known	L5K2D7 , P28066 , Q3UPK6	Q3UPK6_MOUSE	Proteasome subunit alpha type	Homo sapiens , Mus musculus , Pteropus alecto
TGE0001989	5prime_shortened_3prime_alternative, known	L5KQ35 , P0C0S5 , P0C0S6	H2AZ_MOUSE	Histone H2A.Z	Homo sapiens , Mus musculus , Pteropus alecto
TGE0002015	known, known variation	O08547 , O75396	SC22B_MOUSE	Vesicle-trafficking protein SEC22b	Homo sapiens , Mus musculus
TGE0002041	ALT_SPLICE, known	L5JYM4 , P61086 , Q6ZWQ6	Q6ZWQ6_MOUSE	Huntingtin interacting protein 2; isoform CRA_e	Homo sapiens , Mus musculus , Pteropus alecto
TGE0002082	known	P61221 , Q3UHY8	Q3UHY8_MOUSE	ATP-binding cassette sub-family E member 1	Homo sapiens , Mus musculus
TGE0002158	3prime_alternative, known	L5L1E8 , P48729 , Q8BK63	KC1A_MOUSE	Casein kinase I isoform alpha	Homo sapiens , Mus musculus , Pteropus alecto